Timothy
0.9
Tissue Modelling Framework

cells.c  Functions which control current states and evolution of cells 
chemf.c  Functions used for solving chemical global fields 
comm.c  Communication functions 
domdec.c  Domain decomposition functions 
fields.c  Driving functions for the global fields 
fields.h  Variables and arrays for global fields 
global.h  Most important global variables, arrays and defines 
gradient.c  Functions that compute potential gradient 
grid.c  Functions that build the computational grid 
init.c  Initialization functions 
inline.h  Various Timothy inline functions 
interp.c  Grid to cellular data interpolation functions 
io.c  I/O functions 
io.h  Defines and declarations for I/O functions 
main.c  Main simulation loop 
potential.c  Functions that compute the potential 
random.c  Functions which handle the RNG 
stats.c  Functions computing and printing simulation statisctical information 
tempf.c  Functions used for solving temperature field 
tree.c  Tree build functions 
utils.c  Various utility functions 
vessel.c  Functions defining virtual vessels 